1,443 research outputs found
Tag-Aware Recommender Systems: A State-of-the-art Survey
In the past decade, Social Tagging Systems have attracted increasing
attention from both physical and computer science communities. Besides the
underlying structure and dynamics of tagging systems, many efforts have been
addressed to unify tagging information to reveal user behaviors and
preferences, extract the latent semantic relations among items, make
recommendations, and so on. Specifically, this article summarizes recent
progress about tag-aware recommender systems, emphasizing on the contributions
from three mainstream perspectives and approaches: network-based methods,
tensor-based methods, and the topic-based methods. Finally, we outline some
other tag-related works and future challenges of tag-aware recommendation
algorithms.Comment: 19 pages, 3 figure
On the selection and design of proteins and peptide derivatives for the production of photoluminescent, red-emitting gold quantum clusters
Novel pathways of the synthesis of photoluminescent gold quantum clusters (AuQCs) using biomolecules as reactants provide biocompatible products for biological imaging techniques. In order to rationalize the rules for the preparation of red-emitting AuQCs in aqueous phase using proteins or peptides, the role of different organic structural units was investigated. Three systems were studied: proteins, peptides, and amino acid mixtures, respectively. We have found that cysteine and tyrosine are indispensable residues. The SH/S-S ratio in a single molecule is not a critical factor in the synthesis, but on the other hand, the stoichiometry of cysteine residues and the gold precursor is crucial. These observations indicate the importance of proper chemical behavior of all species in a wide size range extending from the atomic distances (in the AuI-S semi ring) to nanometer distances covering the larger sizes of proteins assuring the hierarchical structure of the whole self-assembled system
Alpha-band rhythms in visual task performance: phase-locking by rhythmic sensory stimulation
Oscillations are an important aspect of neuronal activity. Interestingly, oscillatory patterns are also observed in behaviour, such as in visual performance measures after the presentation of a brief sensory event in the visual or another modality. These oscillations in visual performance cycle at the typical frequencies of brain rhythms, suggesting that perception may be closely linked to brain oscillations. We here investigated this link for a prominent rhythm of the visual system (the alpha-rhythm, 8-12 Hz) by applying rhythmic visual stimulation at alpha-frequency (10.6 Hz), known to lead to a resonance response in visual areas, and testing its effects on subsequent visual target discrimination. Our data show that rhythmic visual stimulation at 10.6 Hz: 1) has specific behavioral consequences, relative to stimulation at control frequencies (3.9 Hz, 7.1 Hz, 14.2 Hz), and 2) leads to alpha-band oscillations in visual performance measures, that 3) correlate in precise frequency across individuals with resting alpha-rhythms recorded over parieto-occipital areas. The most parsimonious explanation for these three findings is entrainment (phase-locking) of ongoing perceptually relevant alpha-band brain oscillations by rhythmic sensory events. These findings are in line with occipital alpha-oscillations underlying periodicity in visual performance, and suggest that rhythmic stimulation at frequencies of intrinsic brain-rhythms can be used to reveal influences of these rhythms on task performance to study their functional roles
Comparing the performance of FA, DFA and DMA using different synthetic long-range correlated time series
Notwithstanding the significant efforts to develop estimators of long-range
correlations (LRC) and to compare their performance, no clear consensus exists
on what is the best method and under which conditions. In addition, synthetic
tests suggest that the performance of LRC estimators varies when using
different generators of LRC time series. Here, we compare the performances of
four estimators [Fluctuation Analysis (FA), Detrended Fluctuation Analysis
(DFA), Backward Detrending Moving Average (BDMA), and centred Detrending Moving
Average (CDMA)]. We use three different generators [Fractional Gaussian Noises,
and two ways of generating Fractional Brownian Motions]. We find that CDMA has
the best performance and DFA is only slightly worse in some situations, while
FA performs the worst. In addition, CDMA and DFA are less sensitive to the
scaling range than FA. Hence, CDMA and DFA remain "The Methods of Choice" in
determining the Hurst index of time series.Comment: 6 pages (including 3 figures) + 3 supplementary figure
High Prevalence and Genetic Diversity of HCV among HIV-1 Infected People from Various High-Risk Groups in China
BACKGROUND: Co-infection with HIV-1 and HCV is a significant global public health problem and a major consideration for anti-HIV-1 treatment. HCV infection among HIV-1 positive people who are eligible for the newly launched nationwide anti-HIV-1 treatment program in China has not been well characterized. METHODOLOGY: A nationwide survey of HIV-1 positive injection drug uses (IDU), former paid blood donors (FBD), and sexually transmitted cases from multiple provinces including the four most affected provinces in China was conducted. HCV prevalence and genetic diversity were determined. We found that IDU and FBD have extremely high rates of HCV infection (97% and 93%, respectively). Surprisingly, people who acquired HIV-1 through sexual contact also had a higher rate of HCV infection (20%) than the general population. HIV-1 subtype and HCV genotypes were amazingly similar among FBD from multiple provinces stretching from Central to Northeast China. However, although patterns of overland trafficking of heroin and distinct HIV-1 subtypes could be detected among IDU, HCV genotypes of IDU were more diverse and exhibited significant regional differences. CONCLUSION: Emerging HIV-1 and HCV co-infection and possible sexual transmission of HCV in China require urgent prevention measures and should be taken into consideration in the nationwide antiretroviral treatment program
Cold gas accretion in galaxies
Evidence for the accretion of cold gas in galaxies has been rapidly
accumulating in the past years. HI observations of galaxies and their
environment have brought to light new facts and phenomena which are evidence of
ongoing or recent accretion:
1) A large number of galaxies are accompanied by gas-rich dwarfs or are
surrounded by HI cloud complexes, tails and filaments. It may be regarded as
direct evidence of cold gas accretion in the local universe. It is probably the
same kind of phenomenon of material infall as the stellar streams observed in
the halos of our galaxy and M31. 2) Considerable amounts of extra-planar HI
have been found in nearby spiral galaxies. While a large fraction of this gas
is produced by galactic fountains, it is likely that a part of it is of
extragalactic origin. 3) Spirals are known to have extended and warped outer
layers of HI. It is not clear how these have formed, and how and for how long
the warps can be sustained. Gas infall has been proposed as the origin. 4) The
majority of galactic disks are lopsided in their morphology as well as in their
kinematics. Also here recent accretion has been advocated as a possible cause.
In our view, accretion takes place both through the arrival and merging of
gas-rich satellites and through gas infall from the intergalactic medium (IGM).
The infall may have observable effects on the disk such as bursts of star
formation and lopsidedness. We infer a mean ``visible'' accretion rate of cold
gas in galaxies of at least 0.2 Msol/yr. In order to reach the accretion rates
needed to sustain the observed star formation (~1 Msol/yr), additional infall
of large amounts of gas from the IGM seems to be required.Comment: To appear in Astronomy & Astrophysics Reviews. 34 pages.
Full-resolution version available at
http://www.astron.nl/~oosterlo/accretionRevie
Paradox of low field enhancement factor for field emission nanodiodes in relation to quantum screening effects
We put forward the quantum screening effect in field emission [FE] nanodiodes, explaining relatively low field enhancement factors due to the increased potential barrier that impedes the electron Fowler-Nordheim tunneling, which is usually observed in nanoscale FE experiments. We illustratively show this effect from the energy band diagram and experimentally verify it by performing the nanomanipulation FE measurement for a single P-silicon nanotip emitter (Φ = 4.94eV), with a scanning tungsten-probe anode (work function, Φ = 4.5eV) that constitutes a 75-nm vacuum nanogap. A macroscopic FE measurement for the arrays of emitters with a 17-μm vacuum microgap was also performed for a fair comparison
The efficacy of various machine learning models for multi-class classification of RNA-seq expression data
Late diagnosis and high costs are key factors that negatively impact the care
of cancer patients worldwide. Although the availability of biological markers
for the diagnosis of cancer type is increasing, costs and reliability of tests
currently present a barrier to the adoption of their routine use. There is a
pressing need for accurate methods that enable early diagnosis and cover a
broad range of cancers. The use of machine learning and RNA-seq expression
analysis has shown promise in the classification of cancer type. However,
research is inconclusive about which type of machine learning models are
optimal. The suitability of five algorithms were assessed for the
classification of 17 different cancer types. Each algorithm was fine-tuned and
trained on the full array of 18,015 genes per sample, for 4,221 samples (75 %
of the dataset). They were then tested with 1,408 samples (25 % of the dataset)
for which cancer types were withheld to determine the accuracy of prediction.
The results show that ensemble algorithms achieve 100% accuracy in the
classification of 14 out of 17 types of cancer. The clustering and
classification models, while faster than the ensembles, performed poorly due to
the high level of noise in the dataset. When the features were reduced to a
list of 20 genes, the ensemble algorithms maintained an accuracy above 95% as
opposed to the clustering and classification models.Comment: 12 pages, 4 figures, 3 tables, conference paper: Computing Conference
2019, published at
https://link.springer.com/chapter/10.1007/978-3-030-22871-2_6
Dexamethasone-induced cisplatin and gemcitabine resistance in lung carcinoma samples treated ex vivo
Chemotherapy for lung cancer not only has severe side effects but frequently also exhibits limited, if any clinical effectiveness. Dexamethasone (DEX) and similar glucocorticoids (GCs) such as prednisone are often used in the clinical setting, for example, as cotreatment to prevent nausea and other symptoms. Clinical trials evaluating the impact of GCs on tumour control and patient survival of lung carcinoma have never been performed. Therefore, we isolated cancer cells from resected lung tumour specimens and treated them with cisplatin in the presence or absence of DEX. Cell number of viable and dead cells was evaluated by trypan blue exclusion and viability was measured by the MTT-assay. We found that DEX induced resistance toward cisplatin in all of 10 examined tumour samples. Similar results were found using gemcitabine as cytotoxic drug. Survival of drug-treated lung carcinoma cells in the presence of DEX was longlasting as examined 2 and 3 weeks after cisplatin treatment of a lung carcinoma cell line. These data corroborate recent in vitro and in vivo xenograft findings and rise additional concerns about the widespread combined use of DEX with antineoplastic drugs in the clinical management of patients with lung cancer
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